XM, the Expert Model for DNA compression
- Minh Duc Cao, Trevor I. Dix, Lloyd Allison, Chris Mears,
- 'A Simple Statistical Algorithm for Biological Sequence Compression',
- IEEE Data Compression Conference (DCC), pp.43-52, 2007
[doi:10.1109/DCC.2007.7].
-
- Minh put the XM software, and some other bioinformatics software, at
- [github.com/mdcao/japsa][2016±].
-
- XM was at
- ftp://ftp.csse.monash.edu.au/software/DNAcompress-XM/
- -- until monash pulled the plug on ftp.csse.monash.edu.au in 2014.
-
- Note, there is a
reimplementation ("FuzzyLZ") by Dave Powell of the (different)
'approximate repeats model' (ARM) of DNA
[here].
-
- (Also see
[lloyd/Bioinformatics/].)